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SRX114421: 1000 Genomes Low Coverage Sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 21.6M spots, 4.5G bases, 2.9Gb downloads

Design: Low Pass Illumina Whole Genome sequencing
Submitted by: Broad Institute (BI)
Study: Whole genome sequencing of (GIH) Gujarati (India) ancestry, in Housto n, Texas US HapMap population
show Abstracthide Abstract
<P> The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. Specifically defined goals are (a) the discovery of single nucleotide variants at frequencies of 1% or higher in diverse populations, (b) even more comprehensive discovery (variants down to frequencies of 0.1 - 0.5%) in functional gene regions, and (c) discovery of structural variants, such as copy number variants, other insertions and deletions, and inversions, including sequence-level understanding of breakpoints.</P> <P>The volume of data generated by 1000genomes project is unprecedented. The data is accessible from two mirrored ftp sites at <A HREF="ftp://ftp.1000genomes.ebi.ac.uk">EBI</A> and <A HREF="ftp://ftp-trace.ncbi.nih.gov/1000genomes/">NCBI</A>.
Sample: Coriell GM20897
SAMN00007922 • SRS003856 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Sage-68921
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward barcode
Group tagBasecalls
tagged_655GCCGTCGA
110  reverse

Experiment attributes: (show all 4 attributes...) (hide...)
4 BI attributes: (show...)(hide...)
BI GSSR sample ID: 120626.0
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MVK
BI project name: G14507
BI work request ID: 26160
Pipeline: show...hide...
NameStepProgramVersion
base caller2011-09-27 00:37:43.0GAPipelineRTA1.12.4.2
Runs: 8 runs, 21.6M spots, 4.5G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR3961022,835,270595.4M394.3Mb2012-01-05
SRR3961112,801,366588.3M388.6Mb2012-01-05
SRR3961731,654,167347.4M230.1Mb2012-01-05
SRR3962252,824,581593.2M386.6Mb2012-01-05
SRR3962312,826,002593.5M390.1Mb2012-01-05
SRR3962442,871,074602.9M392.6Mb2012-01-05
SRR3962942,889,899606.9M401.4Mb2012-01-05
SRR3963032,934,396616.2M399.5Mb2012-01-05

ID:
132174

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